Model specification, simulation and visualization for BioNetGen.
Uncertain model structure, parallel tempering for parameter optimization, parameter ensemble analysis, Bayesian model selection.
Receptor aggregation (EGFR), endocytosis (EGFR), receptor-mediated signaling (ErbB family, FcεRI receptor, T-cell receptor, EGFR-MAPK-Akt), autophagy (MTORC), transcriptional regulation (Foxp3).
Graduate Statistics, machine learning, genomics, molecular evolution, computational structural biology, cell & systems modeling (focus on chemical kinetics).
Undergraduate Protein structure and function, cell biology and signaling, biophysical and biochemical experimental methods.