Quantitative Kinetic Models in Biology
Karr Lab
Dept. Genetics & Genomic Sciences
Icahn School of Medicine at Mt. Sinai
john dot sekar at mssm dot edu
johnsekar at pitt dot edu
johnarul dot sekar at gmail dot com
Research Interests
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Quantitative kinetic models in biology
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Rule-based model specification
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Optimizing uncertain model parameters and hypotheses
Publication Highlights
Automated Visualization of Rule-based Models.
John A. P. Sekar, Jose-Juan Tapia, James R. Faeder
PLoS Comput. Biol. 2016 (under review)
doi: 10.1101/074138
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BioNetGen 2.2: Advances in Rule-based Modeling.
Leonard A. Harris, Justin S. Hogg, Jose-Juan Tapia, John A. P. Sekar, Sanjana Gupta, Ilya Korsunsky, Arshi Arora, Dipak Barua, Robert P. Sheehan,
James R. Faeder
Bioinformatics. 2015
doi: 10.1093/bioinformatics/btw469
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Rule-based Modeling of Cell Signaling: Advances in Model Construction, Visualization and Simulation.
John A.P. Sekar
Doctoral Dissertation. University of Pittsburgh 2015
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Rule-based Modeling of Signal Transduction: a Primer.
John A. P. Sekar, James R. Faeder
Methods Mol Biol. 2012; 880: 139–218.
PMID: 23361986
Links
Education
Ph. D. 2015
Computational & Systems Biology
University of Pittsburgh
Pittsburgh, USA
B.Tech. 2007
Industrial Biotechnology
Anna University
Chennai, India